PADMET¶
Installation¶
Stable releases of padmet are best installed via pip
or easy_install
from
PyPI using something like:
$ pip install padmet
Usage¶
To get started using padmet, install the library as described above. Once the library becomes available on the given system, it can be developed against. The developed scripts do not need to reside in any particular location on the system.
Development¶
Anyone interested in contributing or tweaking the library is more then welcome to do so. To start, simply fork the Git repository on Github and start playing with it. Then, issue pull requests.
Tutorial¶
API Documentation¶
Utils API¶
- API documentation for padmet.utils
- Connection
- biggAPI_to_padmet
- check_orthology_input
- enhanced_meneco_output
- extract_orthofinder
- extract_rxn_with_gene_assoc
- gbk_to_faa
- gene_to_targets
- modelSeed_to_padmet
- padmet_to_asp
- padmet_to_matrix
- padmet_to_padmet
- padmet_to_tsv
- pgdb_to_padmet
- sbmlGenerator
- sbml_to_curation_form
- sbml_to_padmet
- sbml_to_sbml
- wikiGenerator
- Exploration
- Management
Getting help¶
If you’ve run into issues, found a bug, or can’t seem to find an answer to your question regarding the use and functionality of padmet, please use Github Issues page to ask your question.